PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0059s0004.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 396aa    MW: 43826.1 Da    PI: 4.5846
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0059s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.11.3e-19127176255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+G+r+++ +g+W+AeIrdp   gk  r++lg+f taeeAa+a++a +++++g
  Kaladp0059s0004.1.p 127 QYRGIRQRP-WGKWAAEIRDP---GKGVRVWLGTFNTAEEAARAYDAEARRIRG 176
                          69*******.**********8...545*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.64E-31127185No hitNo description
PROSITE profilePS5103223.723127184IPR001471AP2/ERF domain
SuperFamilySSF541714.9E-22127185IPR016177DNA-binding domain
SMARTSM003801.0E-38127190IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-32127185IPR001471AP2/ERF domain
PfamPF008474.2E-12128176IPR001471AP2/ERF domain
PRINTSPR003671.2E-11128139IPR001471AP2/ERF domain
PRINTSPR003671.2E-11150166IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001666Biological Processresponse to hypoxia
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MCGGAIISDF IPTSRSHRLT AEFLWPDQQQ KRKSGGRKGS WRFDRQLEIV DAVDDDENDD  60
DDDFEADFQG FKDESDDEGE VEIVVKPFAF KAAAAAKSAS SQAPKPVKSA GFNGLAEKSA  120
KRKRKNQYRG IRQRPWGKWA AEIRDPGKGV RVWLGTFNTA EEAARAYDAE ARRIRGNKAK  180
VNFPEESTPE ARKCASRVNT HSKQLKPHEN THGSKHFGLV GDADQEYFNC LNFMEEKPLT  240
QQYGYMNSFP AADQVAPKPL SPSDAANAYF NSDQGSNSFD CSDFGWGGAR TPEITSLMSA  300
TLEGDESDFL EEANPTKKSK PDFENGMAAE ENPVEKLSEE FAAYESQMKL YQIPFDGSSW  360
NASMDSMLNG ESTQDAGNPM DLWSFDDASP MGGIF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A9e-21127184563ATERF1
2gcc_A9e-21127184563ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6272353e-53AB627235.1 Malus x domestica mRNA, microsatellite: MEST074, clone: FLW01_50_B07.
GenBankGU7324353e-53GU732435.1 Malus x domestica AP2 domain class transcription factor (AP2D11) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001280975.11e-137ethylene-responsive transcription factor RAP2-12-like
TrEMBLD5L1391e-137D5L139_MALDO; AP2 domain class transcription factor
STRINGVIT_09s0002g00470.t011e-128(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14230.23e-66related to AP2 2